14. beta_stacked_barplot.py¶
14.1. Description¶
This program creates stacked barplot for each sample. The stacked barplot showing the proportions of CpGs whose beta values are falling into these four ranges:
[0.00, 0.25] #first quantile
[0.25, 0.50] #second quantile
[0.50, 0.75] #third quantile
[0.75, 1.00] #forth quantile
Example of input file
CpG_ID Sample_01 Sample_02 Sample_03 Sample_04
cg_001 0.831035 0.878022 0.794427 0.880911
cg_002 0.249544 0.209949 0.234294 0.236680
14.2. Options¶
- Options:
- --version
show program’s version number and exit
- -h, --help
show this help message and exit
- -i INPUT_FILE, --input_file=INPUT_FILE
Data frame file containing beta values with the 1st row containing sample IDs and the 1st column containing CpG IDs.
- -o OUT_FILE, --output=OUT_FILE
The prefix of the output file.
14.3. Input files (examples)¶
14.4. Command¶
$beta_stacked_barplot.py -i cirrHCV_vs_normal.data.tsv -o stacked_bar
