1.0.1

CpGtools Documentation

1. Overview
2. Installation
3. CpGtools Release history

Data Format

1. Input file and data format

Test and Demo Datasets

1. Pre-compiled datasets

Usage Information

1. CpG_aggregation.py
2. CpG_anno_position.py
3. CpG_anno_probe.py
4. CpG_distrb_chrom.py
5. CpG_distrb_gene_centered.py
6. CpG_distrb_region.py
7. CpG_logo.py
8. CpG_to_gene.py
9. beta_PCA.py
10. beta_jitter_plot.py
11. beta_m_conversion.py
12. beta_profile_gene_centered.py
13. beta_profile_region.py
14. beta_stacked_barplot.py
15. beta_stats.py
16. beta_tSNE.py
17. beta_topN.py
18. beta_trichotmize.py
19. dmc_Bayes.py
20. dmc_bb.py
21. dmc_fisher.py
22. dmc_glm.py
23. dmc_logit.py
24. dmc_nonparametric.py
25. dmc_ttest.py

Compare Differential Analysis Tools

1. Compare Differential CpG Analysis Tools
2. P-value distributions

LICENSE

CpGtools

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Index

Index

© Copyright 2019, Liguo Wang Last updated on July 7, 2019.

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